Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene co-occurrence
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[Homology]
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AGB16377.1Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain. (207 aa)    
Predicted Functional Partners:
rnp3
RNase P/RNase MRP subunit p30; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family.
 
 
  0.976
rnp2
RNase P/RNase MRP subunit POP5; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 2 family.
  
    0.964
AGB15428.1
NADH:ubiquinone oxidoreductase 49 kD subunit 7; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; Respiratory-chain NADH dehydrogenase, 49 Kd subunit.
   
 0.961
psmA
Proteasome endopeptidase complex, archaeal, alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
   
 
 0.809
AGB16374.1
rRNA metabolism protein, SBDS family; PFAM: Shwachman-Bodian-Diamond syndrome (SBDS) protein; SBDS protein C-terminal domain; TIGRFAM: rRNA metabolism protein, SBDS family.
  
    0.647
AGB15429.1
PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; Belongs to the complex I 20 kDa subunit family.
  
 
 0.591
rps9
PFAM: Ribosomal protein S9/S16; TIGRFAM: archaeal ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
  
 
  0.589
rps5
Ribosomal protein S5/S2; With S4 and S12 plays an important role in translational accuracy.
    
 0.553
AGB16379.1
Hypothetical protein.
       0.538
AGB14805.1
TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
   
 
 0.522
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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