Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB16453.1Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain. (434 aa)    
Predicted Functional Partners:
AGB15137.1
Sugar kinase, ribokinase; PFAM: pfkB family carbohydrate kinase.
 
  
 0.940
AGB15094.1
Choline dehydrogenase-like flavoprotein; PFAM: GMC oxidoreductase.
 
  
 0.923
AGB16452.1
PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase.
 
   
 0.916
AGB15093.1
Hypothetical protein.
     
  0.900
menC
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
  
     0.602
ilvD
PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
     
 0.554
AGB16117.1
Putative phosphatase, C-terminal domain of histone macro H2A1 like protein; PFAM: Macro domain.
   
   0.532
AGB16454.1
Orotate phosphoribosyltransferase-like enzyme; PFAM: Phosphoribosyl transferase domain; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
       0.491
AGB16451.1
Hypothetical protein.
       0.480
AGB15361.1
PFAM: Protein of unknown function (DUF1611).
 
     0.467
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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