Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGB16468.1PFAM: SpoVR like protein. (670 aa)    
Predicted Functional Partners:
AGB16469.1
PFAM: Protein of unknown function (DUF444).
 
  
 0.996
AGB16470.1
Putative Ser protein kinase; PFAM: PrkA AAA domain.
 
  
 0.993
AGB16471.1
PFAM: PrkA AAA domain; PrkA serine protein kinase C-terminal domain.
 
  
 0.989
AGB16662.1
PFAM: Integral membrane protein DUF106.
  
    0.489
ala
Putative ornithine cyclodeaminase, mu-crystallin; Catalyzes the NAD(+)-dependent oxidative deamination of L- alanine to pyruvate, and the reverse reaction, the reductive amination of pyruvate; Belongs to the ornithine cyclodeaminase/mu-crystallin family. Archaeal alanine dehydrogenase subfamily.
     
 0.468
AGB16583.1
Hypothetical protein; PFAM: BioY family.
     
 0.430
AGB16119.1
DNA-binding ferritin-like protein (oxidative damage protectant); PFAM: Ferritin-like domain; Belongs to the Dps family.
  
    0.428
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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