STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB16500.1Hypothetical protein; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase. (447 aa)    
Predicted Functional Partners:
AGB16501.1
Hypothetical protein; PFAM: Domain of unknown function (DUF371).
 
     0.619
AGB16502.1
PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter.
       0.486
AGB16499.1
Hypothetical protein.
       0.456
AGB17316.1
Arylsulfatase A family protein; PFAM: Sulfatase.
 
     0.451
AGB16503.1
Putative endoIII-related endonuclease; PFAM: HhH-GPD superfamily base excision DNA repair protein; Iron-sulfur binding domain of endonuclease III; Helix-hairpin-helix motif.
 
     0.420
AGB14752.1
Arylsulfatase A family protein; PFAM: Sulfatase.
 
     0.401
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.