Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AGB16508.1PFAM: Bacterial regulatory protein, arsR family; MarR family. (433 aa)    
Predicted Functional Partners:
AGB16235.1
Hypothetical protein.
  
     0.610
AGB15267.1
Hypothetical protein.
  
     0.559
AGB15492.1
PFAM: PAP2 superfamily.
 
     0.510
AGB16507.1
Hypothetical protein.
       0.491
AGB16194.1
PFAM: Protein of unknown function (DUF354).
  
     0.490
AGB17278.1
Putative ATP-grasp enzyme; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain.
  
     0.488
AGB14866.1
3-hydroxy-3-methylglutaryl CoA synthase; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N); DUF35 OB-fold domain.
  
     0.481
AGB14874.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
  
     0.471
AGB17434.1
PFAM: Protein of unknown function (DUF354).
  
     0.464
AGB16212.1
Putative membrane protein; PFAM: Protein of unknown function (DUF1616).
  
     0.459
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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