Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB16517.1PFAM: Gas vesicle synthesis protein GvpL/GvpF. (343 aa)    
Predicted Functional Partners:
AGB16515.1
Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
   
 0.987
AGB16516.1
PFAM: Gas vesicle protein K.
 
   
 0.987
AGB16512.1
PFAM: Gas vesicle synthesis protein GvpL/GvpF.
 
   
 0.971
AGB16518.1
Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
     
 0.959
AGB16514.1
Hypothetical protein.
     
 0.924
gvpA
Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
 
   
 0.922
AGB16510.1
PFAM: Gas vesicle synthesis protein GvpO.
 
   
 0.912
AGB16513.1
Hypothetical protein.
     
 0.898
AGB16243.1
PFAM: Protein of unknown function (DUF2910).
  
     0.545
AGB16358.1
PFAM: HTH DNA binding domain.
  
     0.510
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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