Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB16576.1Hypothetical protein. (117 aa)    
Predicted Functional Partners:
AGB17486.1
PFAM: Predicted membrane protein (DUF2243).
  
     0.648
AGB16575.1
Putative translation initiation inhibitor, yjgF family; PFAM: Endoribonuclease L-PSP.
       0.510
AGB16678.1
NhaP-type Na+(K+)/H+ antiporter; PFAM: Sodium/hydrogen exchanger family.
  
     0.510
hisE
PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase.
       0.486
AGB17324.1
Hypothetical protein; PFAM: Uncharacterised ACR, COG1259.
       0.486
AGB14977.1
glycine/D-amino acid oxidase, deaminating; PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] domain.
  
     0.474
AGB16931.1
Hypothetical protein.
  
     0.450
AGB16677.1
PFAM: Ion channel.
  
     0.449
AGB16416.1
Hypothetical protein; PFAM: Domain of unknown function (DUF892).
  
     0.412
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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