Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
AGB16581.1ABC-type cobalt transport system, permease component CbiQ; PFAM: Cobalt transport protein. (234 aa)    
Predicted Functional Partners:
AGB16582.1
ABC-type cobalt transport system, ATPase component; PFAM: ABC transporter.
 
 0.998
AGB16583.1
Hypothetical protein; PFAM: BioY family.
 
 0.996
truA
Pseudouridylate synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
  
  
 0.690
AGB16318.1
PFAM: Protein of unknown function (DUF447).
  
    0.601
AGB17682.1
Hypothetical protein.
       0.565
AGB17019.1
WD40-like repeat protein; PFAM: PQQ enzyme repeat; PKD domain; CARDB.
  
    0.547
AGB15911.1
Archaeal flagella assembly protein J; PFAM: Bacterial type II secretion system protein F domain.
  
     0.526
AGB16872.1
Putative metal-dependent phosphoesterase, PHP family.
 
     0.522
AGB16941.1
TIGR00303 family protein; PFAM: Phosphoribosyltransferase; TIGRFAM: TIGR00303 family protein; Belongs to the UPF0284 family.
  
  
 0.514
AGB17456.1
PFAM: HTH DNA binding domain.
  
     0.507
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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