STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB16609.1Hypothetical protein. (249 aa)    
Predicted Functional Partners:
AGB16882.1
Putative metal-dependent membrane protease; PFAM: CAAX amino terminal protease family.
  
     0.699
AGB15233.1
Hypothetical protein.
  
     0.534
AGB16281.1
Putative domain HDIG-containing protein; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG.
  
     0.516
AGB15126.1
Hypothetical protein.
  
     0.515
AGB16608.1
beta-RFAP synthase; Catalyzes the condensation of 4-aminobenzoate (pABA) with 5- phospho-alpha-D-ribose 1-diphosphate (PRPP) to produce beta- ribofuranosylaminobenzene 5'-phosphate (beta-RFA-P).
       0.515
AGB14885.1
PFAM: HTH DNA binding domain.
  
     0.497
AGB14837.1
PFAM: HTH DNA binding domain.
  
     0.492
AGB17179.1
Hypothetical protein; PFAM: Domain of unknown function (DUF309).
  
     0.471
AGB14879.1
Putative membrane protein; PFAM: Protein of unknown function (DUF1616).
  
     0.439
AGB17670.1
Dolichol kinase.
  
     0.416
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.