Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB16639.1Hypothetical protein. (390 aa)    
Predicted Functional Partners:
AGB16637.1
Hypothetical protein.
     
 0.832
AGB16638.1
Hypothetical protein.
       0.818
AGB16634.1
Hypothetical protein.
       0.799
AGB16636.1
Protein exported by TAT pathway; PFAM: TAT (twin-arginine translocation) pathway signal sequence; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
       0.799
AGB16635.1
Hypothetical protein.
       0.774
AGB16640.1
Hypothetical protein.
       0.530
AGB16633.1
PFAM: Protein of unknown function (DUF1628); TIGRFAM: archaeal flagellin N-terminal-like domain; manually curated.
       0.520
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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