Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB16655.1ABC-type branched-chain amino acid transport system, periplasmic component; PFAM: Receptor family ligand binding region. (452 aa)    
Predicted Functional Partners:
AGB16654.1
PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter.
 
     0.915
AGB16653.1
ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter.
 
     0.826
AGB16652.1
PFAM: Branched-chain amino acid transport system / permease component.
 
   
 0.804
AGB16651.1
PFAM: Branched-chain amino acid transport system / permease component.
 
     0.732
AGB17552.1
Putative lipoprotein involved in nitrous oxide reduction; PFAM: NosL.
  
     0.605
AGB14732.1
Cytotoxic translational repressor of toxin-antitoxin stability system; PFAM: Plasmid stabilisation system protein.
  
     0.539
AGB16240.1
Putative membrane protein; PFAM: DoxX.
  
     0.524
AGB15007.1
Putative permease; PFAM: YHS domain; Predicted permease.
  
     0.505
AGB14866.1
3-hydroxy-3-methylglutaryl CoA synthase; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N); DUF35 OB-fold domain.
 
     0.501
AGB17592.1
Putative nucleic acid-binding protein, contains PIN domain; PFAM: PIN domain.
  
     0.499
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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