Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB16662.1PFAM: Integral membrane protein DUF106. (321 aa)    
Predicted Functional Partners:
AGB16470.1
Putative Ser protein kinase; PFAM: PrkA AAA domain.
  
    0.798
cmk
PFAM: Adenylate kinase; TIGRFAM: cytidylate kinase, putative.
       0.757
truB
rRNA pseudouridine synthase, putative; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily.
       0.754
AGB15370.1
Putative membrane protein; PFAM: Transmembrane exosortase (Exosortase_EpsH).
  
     0.740
AGB14661.1
PFAM: Zn-ribbon containing protein (DUF2072).
  
     0.704
AGB15118.1
PFAM: Protein of unknown function (DUF552).
 
     0.675
AGB15423.1
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L.
   
    0.675
AGB16040.1
PFAM: Membrane protein of unknown function DUF63.
  
     0.663
rpl3
Archaeal ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
 
    0.657
AGB16471.1
PFAM: PrkA AAA domain; PrkA serine protein kinase C-terminal domain.
  
    0.655
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.