STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB16787.1Putative phosphatase; PFAM: haloacid dehalogenase-like hydrolase. (223 aa)    
Predicted Functional Partners:
AGB16521.1
PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.
  
  
 
0.910
AGB17301.1
PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.
  
  
 
0.909
AGB15604.1
HAD-superfamily hydrolase, subfamily IIB; Catalyzes the dephosphorylation of 2-phosphoglycolate.
    
  0.905
AGB16785.1
PFAM: Pterin 4 alpha carbinolamine dehydratase.
  
    0.816
AGB15205.1
Putative DHD superfamily phosphohydrolase.
  
     0.701
AGB14919.1
DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase.
 
 
 
 0.697
AGB15475.1
Methyltransferase family protein; PFAM: Methyltransferase domain.
  
     0.691
AGB15848.1
Putative Fe-S oxidoreductase; PFAM: Uncharacterised protein family (UPF0153).
 
     0.676
AGB17339.1
DEAD_2 domain-containing protein; PFAM: DEAD_2.
 
   
 0.671
AGB17657.1
Thioredoxin-like protein; PFAM: NifU-like domain.
 
     0.670
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.