Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB16790.1PFAM: E3 Ubiquitin ligase. (299 aa)    
Predicted Functional Partners:
AGB16243.1
PFAM: Protein of unknown function (DUF2910).
  
     0.634
AGB16732.1
Outer membrane lipoprotein-sorting protein.
  
     0.610
AGB16791.1
Molecular chaperone (small heat shock protein); PFAM: Hsp20/alpha crystallin family; Belongs to the small heat shock protein (HSP20) family.
 
     0.577
AGB16789.1
Molybdenum cofactor synthesis domain protein; PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain.
       0.574
AGB16220.1
PFAM: Polysaccharide deacetylase.
  
     0.569
AGB17357.1
Hypothetical protein; PFAM: Alpha/beta hydrolase of unknown function (DUF900).
 
     0.560
AGB15662.1
NosL; PFAM: NosL.
  
     0.556
AGB15716.1
PFAM: DoxX.
  
     0.547
AGB17085.1
Putative xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase.
  
     0.541
AGB16193.1
Site-specific recombinase XerD.
  
     0.534
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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