STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB16799.1PFAM: Acetamidase/Formamidase family. (321 aa)    
Predicted Functional Partners:
AGB15675.1
PFAM: Aldehyde dehydrogenase family.
   
 
  0.900
AGB15877.1
PFAM: Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
   
 
  0.900
AGB16741.1
PFAM: Acylphosphatase.
     
  0.900
AGB17011.1
Hypothetical protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; phenylacetic acid degradation protein PaaD.
     
  0.900
AGB17012.1
Coenzyme F390 synthetase; PFAM: AMP-binding enzyme.
    
  0.900
AGB17711.1
PFAM: Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
   
 
  0.900
AGB16798.1
PFAM: Putative integral membrane protein (DUF2391).
       0.533
AGB16844.1
PFAM: Acetamidase/Formamidase family.
  
     0.507
AGB16800.1
Hypothetical protein.
       0.496
AGB15123.1
Hypothetical protein; PFAM: Family of unknown function (DUF1028).
 
     0.420
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.