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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB16817.1PFAM: Bacteriorhodopsin-like protein. (296 aa)    
Predicted Functional Partners:
AGB17145.1
Hypothetical protein.
  
     0.563
AGB15183.1
PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, archaeal type.
  
     0.545
AGB16629.1
Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family.
  
     0.538
AGB17403.1
Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain.
  
     0.504
AGB16818.1
Hypothetical protein.
       0.490
AGB17455.1
PFAM: HTH DNA binding domain.
  
     0.480
AGB17357.1
Hypothetical protein; PFAM: Alpha/beta hydrolase of unknown function (DUF900).
  
     0.422
AGB15691.1
PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
  
     0.417
AGB15010.1
Putative hydrolase or acyltransferase of alpha/beta superfamily; PFAM: alpha/beta hydrolase fold.
  
     0.412
AGB14963.1
PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, archaeal type.
  
     0.406
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.