Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB16836.1PFAM: Proline dehydrogenase. (279 aa)    
Predicted Functional Partners:
AGB16837.1
PFAM: Protein of unknown function (DUF502).
       0.795
carS
CDP-diglyceride synthetase; Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn- glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1- phosphate (DGGGP) and CTP. This reaction is the third ether-bond- formation step in the biosynthesis of archaeal membrane lipids.
       0.773
AGB16803.1
PFAM: Sodium:solute symporter family; TIGRFAM: sodium/proline symporter; transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.739
AGB15498.1
PFAM: Sodium:solute symporter family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.665
AGB16533.1
Heme/copper-type cytochrome/quinol oxidase, subunit 1; PFAM: Cytochrome c oxidase subunit III; Cytochrome C and Quinol oxidase polypeptide I; Belongs to the heme-copper respiratory oxidase family.
 
 
 
 0.519
AGB16059.1
PFAM: Arginase family; TIGRFAM: arginase; Belongs to the arginase family.
 
  
 0.506
AGB15675.1
PFAM: Aldehyde dehydrogenase family.
 
 
 0.498
AGB17211.1
Fe-S oxidoreductase; PFAM: Cysteine-rich domain.
  
   
 0.454
AGB15499.1
Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain.
  
   
 0.435
AGB15025.1
PFAM: Aldehyde dehydrogenase family.
  
 
 0.431
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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