STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB16851.1Ribonuclease HI; PFAM: RNase H. (197 aa)    
Predicted Functional Partners:
AGB14734.1
Ribonuclease H, mammalian HI/archaeal HII subfamily; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
  
 
 0.904
AGB16850.1
Hypothetical protein.
       0.824
tfb-3
Transcription initiation factor TFIIIB, Brf1 subunit/transcription initiation factor TFIIB; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB).
       0.618
AGB16853.1
Hypothetical protein; Involved in DNA damage repair.
       0.585
AGB16603.1
DNA/RNA helicase, superfamily I; PFAM: DNA replication factor Dna2; UvrD/REP helicase.
    
 
 0.537
AGB16180.1
Single-stranded DNA-binding protein.
  
 
   0.522
AGB16091.1
PFAM: Protein of unknown function (DUF1458).
     
 0.497
AGB17134.1
Single-stranded DNA-binding protein.
    
   0.444
AGB17359.1
Single-stranded DNA-binding protein; PFAM: OB-fold nucleic acid binding domain.
    
   0.444
AGB15129.1
PFAM: RNB domain; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases.
  
 
 0.435
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.