Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGB16860.1PFAM: Aminotransferase class I and II. (366 aa)    
Predicted Functional Partners:
AGB15435.1
PFAM: Aminotransferase class I and II.
  
  
 
0.916
AGB16404.1
PFAM: Aminotransferase class I and II.
  
  
 
0.915
AGB17275.1
PFAM: Prephenate dehydratase; ACT domain.
 
  
  0.913
AGB15476.1
PFAM: Prephenate dehydrogenase.
     
  0.900
hisC
PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase.
  
  
 
0.834
katG
Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
     
  0.800
mfnA
Tyrosine decarboxylase MnfA; Catalyzes the decarboxylation of L-aspartate to produce beta- alanine; Belongs to the group II decarboxylase family. MfnA subfamily.
     
  0.800
AGB15952.1
PFAM: chorismate binding enzyme; TIGRFAM: isochorismate synthases.
     
  0.800
AGB16859.1
PFAM: Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA C-terminal domain; manually curated.
       0.755
AGB16861.1
PFAM: Anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA.
       0.557
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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