spt5 protein (Halovivax ruber) - STRING interaction network

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spt5

Ribosomal protein L24p/L26e, archaeal; Stimulates transcription elongation; Belongs to the archaeal Spt5 family. (145 aa)

Predicted Functional Partners:

spt4

0.998

rpl1

0.982

rpl30

0.982

rps3

0.977

rpl10

0.976

rpl11

0.975

nusA

0.974

rpoD

0.974

AGB15100.1

0.971

rpl15

0.963

Your Current Organism:

Halovivax ruber

NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGB15100.1	nusA	Halru_0465	Halru_0468	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.	0.998
AGB15100.1	rpl1	Halru_0465	Halru_1395	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	0.903
AGB15100.1	rpl10	Halru_0465	Halru_1394	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.936
AGB15100.1	rpl11	Halru_0465	Halru_1397	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.	0.931
AGB15100.1	rpl15	Halru_0465	Halru_1940	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.940
AGB15100.1	rpl30	Halru_0465	Halru_1941	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	PFAM: Ribosomal protein L30p/L7e; TIGRFAM: 50S ribosomal protein L30P, archaeal.	0.899
AGB15100.1	rpoD	Halru_0465	Halru_1750	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family.	0.996
AGB15100.1	rps3	Halru_0465	Halru_1956	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Ribosomal protein S3, eukaryotic/archaeal type; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.950
AGB15100.1	spt4	Halru_0465	Halru_2545	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, subunit E; Stimulates transcription elongation; Belongs to the archaeal Spt4 family.	0.890
AGB15100.1	spt5	Halru_0465	Halru_2288	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Ribosomal protein L24p/L26e, archaeal; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.	0.971
nusA	AGB15100.1	Halru_0468	Halru_0465	NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
nusA	rpl1	Halru_0468	Halru_1395	NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.	Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	0.958
nusA	rpl10	Halru_0468	Halru_1394	NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.	Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.933
nusA	rpl11	Halru_0468	Halru_1397	NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.	Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.	0.930
nusA	rpl15	Halru_0468	Halru_1940	NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.	Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.885
nusA	rpl30	Halru_0468	Halru_1941	NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.	PFAM: Ribosomal protein L30p/L7e; TIGRFAM: 50S ribosomal protein L30P, archaeal.	0.868
nusA	rpoD	Halru_0468	Halru_1750	NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.	DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family.	0.968
nusA	rps3	Halru_0468	Halru_1956	NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.	Ribosomal protein S3, eukaryotic/archaeal type; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.948
nusA	spt5	Halru_0468	Halru_2288	NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.	Ribosomal protein L24p/L26e, archaeal; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.	0.974
rpl1	AGB15100.1	Halru_1395	Halru_0465	Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.903

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