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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB17031.1PFAM: PQQ enzyme repeat. (399 aa)    
Predicted Functional Partners:
AGB17030.1
Hypothetical protein.
       0.779
AGB17516.1
Hypothetical protein.
  
     0.692
AGB17714.1
WD40-like repeat protein.
  
     0.581
AGB16636.1
Protein exported by TAT pathway; PFAM: TAT (twin-arginine translocation) pathway signal sequence; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
  
     0.561
AGB14793.1
WD40-like repeat protein.
  
     0.545
rps24e
PFAM: Ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
       0.503
rps27ae
PFAM: Ribosomal protein S27a; Belongs to the eukaryotic ribosomal protein eS31 family.
       0.503
AGB14768.1
Putative membrane-associated Zn-dependent protease; PFAM: Peptidase family M50.
  
    0.403
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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