Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB17136.1Hypothetical protein; Probable pre-rRNA processing protein involved in ribosome biogenesis; Belongs to the TSR3 family. (166 aa)    
Predicted Functional Partners:
AGB17624.1
Ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family.
 
    0.679
AGB17310.1
PFAM: GTPase of unknown function; TIGRFAM: small GTP-binding protein domain.
 
    0.657
rpl22
Ribosomal protein L22/L17; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
  
    0.633
AGB15090.1
Putative Zn-finger protein.
  
    0.620
AGB14795.1
PFAM: KH domain; TIGRFAM: arCOG04150 universal archaeal KH domain protein.
 
   0.612
AGB16039.1
rRNA biogenesis protein; PFAM: Putative snoRNA binding domain.
  
    0.610
AGB17235.1
Ketosteroid isomerase-like protein; PFAM: SnoaL-like polyketide cyclase.
       0.603
AGB16729.1
PFAM: GTPase of unknown function; TGS domain; TIGRFAM: small GTP-binding protein domain.
  
    0.597
AGB14743.1
Putative nucleic acid-binding protein with PIN domain and Zn ribbon.
  
  
 0.588
rps12
Ribosomal protein S23; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
  
    0.584
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.