Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AGB17229.1PFAM: HTH DNA binding domain. (214 aa)    
Predicted Functional Partners:
AGB17456.1
PFAM: HTH DNA binding domain.
  
     0.669
AGB17556.1
PFAM: HTH DNA binding domain.
  
     0.626
AGB14808.1
Putative nuclease of the RecB family; PFAM: Protein of unknown function DUF91; Topoisomerase DNA binding C4 zinc finger.
  
     0.586
AGB17227.1
Hypothetical protein.
       0.553
AGB17228.1
Hypothetical protein.
       0.553
AGB15542.1
Hypothetical protein.
  
     0.513
AGB17495.1
PFAM: Sugar-specific transcriptional regulator TrmB.
  
     0.507
AGB15350.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.505
AGB17230.1
PFAM: HTH DNA binding domain.
      
0.499
AGB16877.1
Putative transcription factor, MBF1 like protein.
  
     0.458
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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