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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB17247.1PFAM: Glycosyl transferase family 2. (298 aa)    
Predicted Functional Partners:
AGB17248.1
Choline dehydrogenase-like flavoprotein; PFAM: GMC oxidoreductase.
 
     0.671
AGB17249.1
Hypothetical protein.
       0.640
AGB15243.1
PFAM: Glycosyl transferase family 2.
  
     0.523
AGB15609.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1; Glycosyl transferase family 2.
 
 
 0.520
AGB17438.1
PFAM: Glycosyl transferase family 2.
  
     0.511
AGB16195.1
PFAM: Glycosyl transferase family 2.
  
     0.446
AGB17242.1
PFAM: NAD dependent epimerase/dehydratase family.
 
 
 0.444
AGB14890.1
Subtilisin-like serine protease; PFAM: Subtilase family; Belongs to the peptidase S8 family.
 
 
 0.433
AGB16227.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
 
 0.432
AGB14805.1
TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
 
 
 0.429
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.