Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB17334.1Hypothetical protein. (210 aa)    
Predicted Functional Partners:
radA
DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.
       0.755
AGB17069.1
Phage shock protein A (IM30), suppresses sigma54-dependent transcription; PFAM: PspA/IM30 family.
  
     0.732
AGB16793.1
Hypothetical protein.
  
     0.582
AGB17337.1
NMD protein affecting ribosome stability and mRNA decay; PFAM: NMD3 family.
       0.555
AGB17335.1
PFAM: Glycosyl transferase family 2.
 
     0.533
AGB17694.1
PFAM: Uncharacterized protein family UPF0029; Domain of unknown function (DUF1949); TIGRFAM: uncharacterized protein, YigZ family.
 
     0.532
AGB16872.1
Putative metal-dependent phosphoesterase, PHP family.
  
     0.475
AGB16318.1
PFAM: Protein of unknown function (DUF447).
  
     0.451
htpX-2
Zn-dependent protease with chaperone function; PFAM: Peptidase family M48; Belongs to the peptidase M48B family.
 
     0.415
AGB17641.1
Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily.
 
     0.410
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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