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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB17379.1Type IV secretory pathway, VirD4 component; PFAM: Type IV secretion-system coupling protein DNA-binding domain. (1014 aa)    
Predicted Functional Partners:
AGB17381.1
Hypothetical protein.
 
   
 0.967
AGB17380.1
Hypothetical protein.
 
     0.937
AGB17382.1
Hypothetical protein.
       0.768
AGB17383.1
Hypothetical protein.
       0.737
AGB17384.1
Hypothetical protein.
       0.661
AGB17385.1
Hypothetical protein.
       0.586
AGB17386.1
Hypothetical protein; Manually curated.
       0.586
AGB16278.1
Small-conductance mechanosensitive channel; PFAM: Conserved TM helix.
  
     0.559
AGB17376.1
PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit.
       0.454
AGB17377.1
PFAM: Type I restriction modification DNA specificity domain; manually curated.
       0.454
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.