STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB17381.1Hypothetical protein. (1105 aa)    
Predicted Functional Partners:
AGB17379.1
Type IV secretory pathway, VirD4 component; PFAM: Type IV secretion-system coupling protein DNA-binding domain.
 
   
 0.985
AGB17380.1
Hypothetical protein.
 
     0.973
AGB17382.1
Hypothetical protein.
       0.964
AGB17384.1
Hypothetical protein.
       0.875
AGB17383.1
Hypothetical protein.
       0.773
AGB17386.1
Hypothetical protein; Manually curated.
       0.633
AGB17385.1
Hypothetical protein.
       0.613
AGB16240.1
Putative membrane protein; PFAM: DoxX.
  
     0.439
AGB17376.1
PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit.
       0.405
AGB17377.1
PFAM: Type I restriction modification DNA specificity domain; manually curated.
       0.405
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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