Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGB17391.1Hypothetical protein. (84 aa)    
Predicted Functional Partners:
AGB17390.1
DNA polymerase elongation subunit (family B); PFAM: DNA polymerase family B.
 
   
 0.938
AGB17392.1
Hypothetical protein.
       0.784
AGB15318.1
DNA polymerase elongation subunit (family B); PFAM: DNA polymerase family B.
 
   
 0.739
AGB17219.1
PFAM: HTH DNA binding domain.
  
     0.591
AGB15492.1
PFAM: PAP2 superfamily.
  
     0.582
AGB15183.1
PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, archaeal type.
  
     0.542
AGB15881.1
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold.
  
     0.540
AGB17552.1
Putative lipoprotein involved in nitrous oxide reduction; PFAM: NosL.
  
     0.540
AGB17556.1
PFAM: HTH DNA binding domain.
  
     0.540
AGB17455.1
PFAM: HTH DNA binding domain.
  
     0.537
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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