Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AGB17403.1Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain. (344 aa)    
Predicted Functional Partners:
AGB16937.1
Putative HAD superfamily hydrolase; PFAM: haloacid dehalogenase-like hydrolase.
  
     0.738
AGB17123.1
Uncharacterized protein, possibly involved in glyoxylate utilization; PFAM: Cupin domain.
  
     0.626
AGB15381.1
Hypothetical protein.
  
     0.597
AGB15226.1
Hypothetical protein.
  
     0.570
AGB15890.1
Putative ATPase; PFAM: Domain of unknown function DUF87.
  
   
 0.561
AGB16071.1
PFAM: Thioredoxin.
  
     0.558
AGB16521.1
PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.
  
     0.512
AGB16817.1
PFAM: Bacteriorhodopsin-like protein.
  
     0.504
AGB17556.1
PFAM: HTH DNA binding domain.
  
     0.489
AGB15183.1
PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, archaeal type.
  
    0.482
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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