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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB17415.1Putative metal-dependent hydrolase; PFAM: Putative cyclase. (266 aa)    
Predicted Functional Partners:
AGB17414.1
PFAM: Prokaryotic protein of unknown function (DUF849).
 
    0.873
AGB17420.1
ABC-type branched-chain amino acid transport system, periplasmic component; PFAM: Receptor family ligand binding region.
 
     0.622
AGB17416.1
ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter.
  
    0.471
AGB17417.1
PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter.
       0.453
AGB17418.1
PFAM: Branched-chain amino acid transport system / permease component.
       0.447
AGB17419.1
PFAM: Branched-chain amino acid transport system / permease component.
       0.446
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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