Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGB17447.1Hypothetical protein. (363 aa)    
Predicted Functional Partners:
AGB17446.1
PFAM: ATPase family associated with various cellular activities (AAA).
 
     0.884
AGB17288.1
Transglutaminase-like enzyme, predicted cysteine protease; PFAM: Transglutaminase-like superfamily.
 
     0.855
AGB14879.1
Putative membrane protein; PFAM: Protein of unknown function (DUF1616).
 
    0.754
AGB15265.1
Putative membrane protein; PFAM: Protein of unknown function (DUF1616).
 
    0.671
AGB14837.1
PFAM: HTH DNA binding domain.
  
     0.641
AGB14878.1
Hypothetical protein.
       0.626
AGB17443.1
PFAM: Protein of unknown function DUF58.
 
    0.623
AGB15925.1
Putative membrane protein; PFAM: VIT family; TIGRFAM: TIGR00267 family protein.
  
     0.616
AGB17321.1
PFAM: Arylsulfotransferase (ASST).
  
     0.600
AGB14974.1
PFAM: Uncharacterised protein family (UPF0146); Belongs to the UPF0146 family.
  
     0.587
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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