Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AGB17455.1PFAM: HTH DNA binding domain. (244 aa)    
Predicted Functional Partners:
AGB17454.1
Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily.
 
     0.642
AGB15183.1
PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, archaeal type.
  
     0.631
AGB17233.1
PFAM: CAAX amino terminal protease family.
  
     0.613
AGB15691.1
PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
  
     0.611
AGB16826.1
Hypothetical protein.
  
     0.608
AGB15104.1
Membrane-associated phospholipid phosphatase; PFAM: PAP2 superfamily.
  
     0.539
AGB17391.1
Hypothetical protein.
  
     0.537
AGB17317.1
PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein.
  
     0.499
AGB16817.1
PFAM: Bacteriorhodopsin-like protein.
  
     0.480
AGB14732.1
Cytotoxic translational repressor of toxin-antitoxin stability system; PFAM: Plasmid stabilisation system protein.
  
     0.457
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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