Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGB17469.1PFAM: Redoxin. (178 aa)    
Predicted Functional Partners:
AGB17468.1
PFAM: SCO1/SenC.
 
     0.836
AGB15381.1
Hypothetical protein.
  
     0.674
AGB17570.1
PFAM: Cytochrome C biogenesis protein transmembrane region.
 
     0.618
AGB17467.1
Plastocyanin; PFAM: Copper binding proteins, plastocyanin/azurin family.
       0.598
AGB15890.1
Putative ATPase; PFAM: Domain of unknown function DUF87.
  
     0.583
AGB16071.1
PFAM: Thioredoxin.
  
     0.541
AGB16521.1
PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.
  
     0.535
AGB17470.1
Hypothetical protein.
       0.510
AGB15716.1
PFAM: DoxX.
  
     0.495
AGB15076.1
Hypothetical protein.
  
     0.473
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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