Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB17472.1PFAM: HTH DNA binding domain. (245 aa)    
Predicted Functional Partners:
AGB17471.1
Putative flavin-nucleotide-binding protein; PFAM: Pyridoxamine 5'-phosphate oxidase.
       0.705
AGB17321.1
PFAM: Arylsulfotransferase (ASST).
  
     0.601
AGB15890.1
Putative ATPase; PFAM: Domain of unknown function DUF87.
  
     0.582
AGB15381.1
Hypothetical protein.
  
     0.562
AGB16925.1
PFAM: Major Facilitator Superfamily.
  
     0.548
AGB16607.1
RecA-superfamily ATPase possibly involved in signal transduction.
  
     0.518
AGB16273.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.511
AGB17473.1
Hypothetical protein; TIGRFAM: MJ0042 family finger-like domain.
       0.507
AGB14885.1
PFAM: HTH DNA binding domain.
  
     0.496
AGB15550.1
RecA-superfamily ATPase possibly involved in signal transduction.
  
     0.463
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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