Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB17495.1PFAM: Sugar-specific transcriptional regulator TrmB. (133 aa)    
Predicted Functional Partners:
AGB17494.1
Hypothetical protein.
       0.773
AGB15489.1
Putative RNA-binding protein containing KH domain, possibly ribosomal protein; PFAM: CRS1 / YhbY (CRM) domain.
  
    0.603
AGB17493.1
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
       0.590
AGB15731.1
Hypothetical protein.
  
     0.578
AGB15002.1
PFAM: Protein of unknown function DUF54; Belongs to the UPF0201 family.
  
     0.570
AGB14837.1
PFAM: HTH DNA binding domain.
  
     0.563
AGB17496.1
Putative permease; PFAM: Sulfite exporter TauE/SafE.
 
     0.553
AGB15332.1
TIGRFAM: TIGR01210 family protein.
  
     0.547
dtdA
Hypothetical protein; D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo.
 
    0.539
AGB16877.1
Putative transcription factor, MBF1 like protein.
  
     0.529
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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