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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB17556.1PFAM: HTH DNA binding domain. (234 aa)    
Predicted Functional Partners:
AGB16607.1
RecA-superfamily ATPase possibly involved in signal transduction.
  
     0.648
AGB17229.1
PFAM: HTH DNA binding domain.
  
     0.626
AGB15319.1
Hypothetical protein.
  
     0.617
AGB15381.1
Hypothetical protein.
  
     0.615
AGB16141.1
PFAM: HTH DNA binding domain.
  
     0.613
AGB16788.1
PFAM: HTH DNA binding domain.
  
     0.613
AGB17456.1
PFAM: HTH DNA binding domain.
  
     0.607
AGB16937.1
Putative HAD superfamily hydrolase; PFAM: haloacid dehalogenase-like hydrolase.
  
     0.580
AGB15890.1
Putative ATPase; PFAM: Domain of unknown function DUF87.
  
     0.544
AGB15542.1
Hypothetical protein.
  
     0.542
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.