Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGB17562.1PFAM: Uncharacterized conserved protein (DUF2249). (75 aa)    
Predicted Functional Partners:
AGB17457.1
PFAM: Uncharacterized conserved protein (DUF2249).
 
     0.799
AGB17560.1
Hypothetical protein.
 
     0.714
AGB17145.1
Hypothetical protein.
  
     0.597
AGB15183.1
PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, archaeal type.
  
     0.555
AGB17563.1
PFAM: Sugar-specific transcriptional regulator TrmB.
       0.500
AGB14963.1
PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, archaeal type.
  
     0.485
AGB14704.1
Putative transcriptional regulator.
  
     0.479
AGB17561.1
Hypothetical protein.
       0.469
AGB15357.1
PFAM: HPP family.
  
     0.462
AGB17730.1
PFAM: HPP family.
  
     0.414
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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