STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB17601.1Hypothetical protein. (95 aa)    
Predicted Functional Partners:
AGB16044.1
PFAM: Succinylglutamate desuccinylase / Aspartoacylase family.
  
     0.530
AGB17339.1
DEAD_2 domain-containing protein; PFAM: DEAD_2.
  
     0.512
AGB17602.1
Hypothetical protein.
       0.509
AGB17657.1
Thioredoxin-like protein; PFAM: NifU-like domain.
  
     0.455
AGB17246.1
Hypothetical protein.
  
     0.448
AGB17600.1
Subtilisin-like serine protease; PFAM: PA domain; Fn3-like domain (DUF1034); Subtilase family; Belongs to the peptidase S8 family.
       0.440
AGB16167.1
Putative exonuclease.
  
     0.439
AGB16429.1
Hypothetical protein.
  
     0.428
AGB17603.1
PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family.
 
     0.427
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.