Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB17614.1PFAM: Nitroreductase family; TIGRFAM: SagB-type dehydrogenase domain. (304 aa)    
Predicted Functional Partners:
AGB17616.1
PFAM: YcaO-like family; TIGRFAM: uncharacterized domain; bacteriocin biosynthesis docking scaffold, SagD family.
 
  
 0.932
AGB17615.1
Hypothetical protein; TIGRFAM: bacteriocin biosynthesis cyclodehydratase domain; bacteriocin biosynthesis cyclodehydratase, SagC family.
 
     0.852
AGB16078.1
PFAM: YcaO-like family; TIGRFAM: uncharacterized domain; bacteriocin biosynthesis docking scaffold, SagD family.
 
  
 0.784
AGB15416.1
Hypothetical protein.
 
  
 0.692
AGB17610.1
Hypothetical protein.
 
  
 0.687
AGB15868.1
ABC-type multidrug transport system, permease component; PFAM: ABC-2 type transporter.
  
  
 0.637
AGB16814.1
ABC-type polysaccharide/polyol phosphate export systems, permease component; PFAM: ABC-2 type transporter; TIGRFAM: ABC transporter efflux protein, DrrB family.
  
  
 0.637
AGB17010.1
Alpha-mannosidase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase.
 
  
 0.611
AGB14744.1
Putative metal-dependent membrane protease; PFAM: CAAX amino terminal protease family.
 
  
 0.573
AGB16733.1
Thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Glutaredoxin; TIGRFAM: thioredoxin-disulfide reductase; Glutaredoxin, GrxC family.
  
 
 0.560
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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