Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB17632.1Hypothetical protein. (457 aa)    
Predicted Functional Partners:
AGB17260.1
Putative metal-binding protein.
  
     0.714
AGB15475.1
Methyltransferase family protein; PFAM: Methyltransferase domain.
  
     0.699
AGB15747.1
Hypothetical protein.
  
     0.669
AGB16480.1
Putative acyltransferase; PFAM: Protein of unknown function, DUF583.
  
     0.666
AGB15118.1
PFAM: Protein of unknown function (DUF552).
  
     0.643
AGB15795.1
DNA polymerase elongation subunit (family B); PFAM: DNA polymerase family B; DNA polymerase family B, exonuclease domain.
  
     0.636
AGB16132.1
Hypothetical protein; PFAM: MTH865-like family.
  
     0.614
AGB15205.1
Putative DHD superfamily phosphohydrolase.
 
     0.610
cofC
2-phospho-L-lactate guanylyltransferase; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor; Belongs to the CofC family.
  
     0.609
AGB15382.1
Putative metal-binding protein; PFAM: Uncharacterised protein family UPF0058.
 
     0.606
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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