Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGB29977.1Hypothetical protein. (196 aa)    
Predicted Functional Partners:
AGB29976.1
Fe-S oxidoreductase; PFAM: Cysteine-rich domain; 4Fe-4S binding domain.
       0.706
AGB29980.1
RecB family exonuclease.
       0.659
AGB30874.1
Hypothetical protein; PFAM: BioY family.
       0.488
AGB31539.1
Orotate phosphoribosyltransferase-like enzyme; PFAM: Phosphoribosyl transferase domain; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
      
 0.470
AGB30876.1
ABC-type cobalt transport system, permease component CbiQ; PFAM: Cobalt transport protein.
       0.435
AGB30875.1
ABC-type cobalt transport system, ATPase component; PFAM: ABC transporter; TIGRFAM: cobalt transport protein ATP-binding subunit.
       0.432
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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