STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB29983.1Peroxiredoxin; PFAM: AhpC/TSA family. (171 aa)    
Predicted Functional Partners:
AGB29984.1
Glutaredoxin-like protein; PFAM: Glutaredoxin; manually curated.
   
 0.980
AGB29982.1
PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein.
     
 0.907
AGB29985.1
CBS domain-containing protein; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain.
       0.819
AGB30323.1
SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase; PFAM: TRAM domain.
  
     0.653
AGB32094.1
PFAM: Sugar-specific transcriptional regulator TrmB; Archaeal transcriptional regulator TrmB.
 
     0.636
AGB33425.1
ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein.
  
     0.636
AGB31940.1
Acetyltransferase, N-acetylglutamate synthase; PFAM: Acetyltransferase (GNAT) family.
  
     0.633
AGB30844.1
PFAM: HTH DNA binding domain.
  
     0.628
AGB30333.1
DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase.
 
   
 0.627
AGB30462.1
Putative DHD superfamily phosphohydrolase.
  
     0.615
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.