STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB30015.1Leader peptidase family protein; PFAM: Archaeal Peptidase A24 C-terminus Type II; Type IV leader peptidase family. (342 aa)    
Predicted Functional Partners:
AGB32871.1
PFAM: ScpA/B protein.
  
    0.755
AGB32456.1
Archaeal flagella assembly protein J; PFAM: Bacterial type II secretion system protein F domain.
 
   
 0.739
AGB31051.1
Putative acyltransferase; PFAM: Protein of unknown function, DUF583.
  
     0.703
AGB33637.1
PFAM: Zn-ribbon containing protein (DUF2072).
  
     0.694
AGB30953.1
Putative metal-binding protein.
  
     0.679
AGB32813.1
Methyltransferase family protein; PFAM: Methyltransferase domain.
  
     0.676
AGB31555.1
Hypothetical protein.
 
     0.675
AGB31980.1
PFAM: Membrane protein of unknown function DUF63.
  
     0.668
AGB30315.1
Hypothetical protein.
  
     0.664
AGB30826.1
PFAM: Protein of unknown function (DUF1628); TIGRFAM: archaeal flagellin N-terminal-like domain.
  
   
 0.647
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.