STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGB30158.1Putative membrane protein; PFAM: Bacterial membrane flanked domain. (171 aa)    
Predicted Functional Partners:
AGB30157.1
Hypothetical protein.
       0.661
AGB30156.1
Superfamily II helicase; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; Sec63 Brl domain.
       0.564
lipA
Lipoate synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
       0.550
AGB30297.1
Hypothetical protein; PFAM: Bacterial membrane flanked domain.
  
  
 0.523
AGB32129.1
Hypothetical protein; PFAM: Bacterial membrane flanked domain.
  
  
 0.523
AGB32136.1
Hypothetical protein; PFAM: Bacterial membrane flanked domain.
  
  
 0.523
AGB30854.1
PFAM: Uncharacterised conserved protein (DUF2342); TIGRFAM: putative hydrolase; uncharacterized protein, coenzyme F420 biosynthesis associated.
 
    0.522
AGB30448.1
Hypothetical protein.
  
     0.465
AGB33063.1
PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type.
  
    0.455
AGB30733.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
  
    0.447
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.