STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB30195.1Transposase; PFAM: Putative transposase DNA-binding domain; Probable transposase. (449 aa)    
Predicted Functional Partners:
AGB30584.1
PFAM: Putative transposase DNA-binding domain; TIGRFAM: transposase, IS605 OrfB family, central region.
  
   
 0.618
AGB29995.1
Transposase.
  
     0.563
rps15p
Ribosomal protein S15P/S13E; PFAM: Ribosomal S13/S15 N-terminal domain; Ribosomal protein S15.
    
   0.563
AGB30194.1
Transcriptional regulator of a riboflavin/FAD biosynthetic operon; PFAM: HTH domain.
       0.558
AGB32612.1
PFAM: Fic/DOC family; TIGRFAM: death-on-curing family protein.
  
     0.558
AGB33308.1
Transposase; PFAM: DDE superfamily endonuclease.
  
     0.553
AGB30318.1
Transposase.
  
     0.548
AGB30355.1
Transposase.
  
     0.548
AGB31098.1
Transposase.
  
     0.548
AGB31758.1
Transposase.
  
     0.548
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.