STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB30234.1Putative integral membrane protein; PFAM: Polyketide cyclase / dehydrase and lipid transport. (286 aa)    
Predicted Functional Partners:
AGB30233.1
Theronine dehydrogenase-like Zn-dependent dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase.
 
     0.925
AGB32760.1
PFAM: Predicted membrane protein (DUF2243).
  
     0.586
AGB30235.1
PFAM: Ion channel.
 
     0.530
AGB32345.1
NhaP-type Na+(K+)/H+ antiporter; PFAM: Sodium/hydrogen exchanger family.
  
     0.528
AGB32208.1
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box.
  
     0.512
AGB30203.1
Hypothetical protein.
  
     0.507
AGB32485.1
PAS domain S-box; PFAM: HTH DNA binding domain; Phage integrase family; PAS fold; TIGRFAM: PAS domain S-box.
 
    0.496
AGB32075.1
PFAM: Manganese containing catalase.
  
     0.490
AGB30276.1
Beta-carotene 15,15''-monooxygenase, Brp/Blh family; Catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans-retinal. Belongs to the Brp/Blh beta-carotene diooxygenase family.
     
 0.485
AGB30274.1
PFAM: Bacteriorhodopsin-like protein.
  
  
 0.406
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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