STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
AGB30276.1Beta-carotene 15,15''-monooxygenase, Brp/Blh family; Catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans-retinal. Belongs to the Brp/Blh beta-carotene diooxygenase family. (353 aa)    
Predicted Functional Partners:
AGB30275.1
TIGRFAM: lycopene cyclase domain.
 
   
 0.993
AGB30274.1
PFAM: Bacteriorhodopsin-like protein.
 
   
 0.877
AGB30944.1
PFAM: Bacteriorhodopsin-like protein.
 
   
 0.756
AGB33403.1
Hypothetical protein.
  
     0.669
AGB31959.1
Bacteriophytochrome (light-regulated signal transduction histidine kinase); PFAM: His Kinase A (phosphoacceptor) domain.
  
     0.657
AGB31639.1
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.
  
    0.629
AGB30937.1
Hypothetical protein.
  
    0.573
AGB31748.1
PAS domain S-box; PFAM: HTH DNA binding domain; Response regulator receiver domain; PAS fold; TIGRFAM: PAS domain S-box.
 
    0.566
AGB30988.1
Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase.
     
 0.534
AGB31838.1
Hypothetical protein.
  
     0.532
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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