STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB30317.1Hypothetical protein. (331 aa)    
Predicted Functional Partners:
AGB30319.1
Putative membrane protein; PFAM: Domain of unknown function (DUF373).
 
     0.873
AGB30369.1
Putative membrane-associated Zn-dependent protease; PFAM: Peptidase family M50; PDZ domain (Also known as DHR or GLGF).
 
     0.694
AGB31461.1
Putative transcriptional regulator; PFAM: Helix-turn-helix.
  
     0.684
AGB33062.1
Putative membrane protein; PFAM: Domain of unknown function (DUF373).
 
     0.672
AGB33475.1
PFAM: Protein of unknown function DUF54; Belongs to the UPF0201 family.
  
     0.670
AGB32943.1
PFAM: PUA domain; Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; uncharacterized domain 2.
  
     0.650
AGB33402.1
Putative Zn-finger protein.
  
     0.637
AGB33532.1
NMD protein affecting ribosome stability and mRNA decay; PFAM: NMD3 family.
  
     0.624
AGB31032.1
Single-stranded DNA-binding protein.
  
     0.603
AGB30759.1
PFAM: Uncharacterized protein conserved in archaea (DUF2240).
  
     0.602
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.