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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB30328.1Hypothetical protein. (323 aa)    
Predicted Functional Partners:
AGB30267.1
PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, archaeal type.
  
     0.583
AGB30938.1
PFAM: Integral membrane protein DUF95.
  
     0.571
AGB30621.1
Hypothetical protein.
  
     0.562
AGB30327.1
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein; PFAM: short chain dehydrogenase.
       0.539
AGB30329.1
Hypothetical protein.
       0.533
AGB30195.1
Transposase; PFAM: Putative transposase DNA-binding domain; Probable transposase.
  
     0.501
AGB32013.1
Hypothetical protein.
  
     0.485
AGB33584.1
Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family; PFAM: PAP2 superfamily.
 
     0.456
AGB32717.1
3-polyprenyl-4-hydroxybenzoate decarboxylase-like protein; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: UbiD family decarboxylases.
  
     0.435
tfx
PFAM: Sigma-70, region 4; TIGRFAM: DNA-binding protein, Tfx family.
       0.426
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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