STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB30342.1NTP pyrophosphohydrolase; PFAM: NUDIX domain. (152 aa)    
Predicted Functional Partners:
AGB32303.1
Hypothetical protein.
  
     0.654
AGB32717.1
3-polyprenyl-4-hydroxybenzoate decarboxylase-like protein; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: UbiD family decarboxylases.
  
     0.617
AGB30983.1
PAS domain S-box; PFAM: HTH DNA binding domain; GAF domain; Response regulator receiver domain; PAS fold; TIGRFAM: PAS domain S-box.
  
     0.587
AGB32886.1
Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily.
  
    0.560
AGB30577.1
Hypothetical protein; PFAM: YqcI/YcgG family.
  
     0.556
AGB31257.1
Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain.
  
     0.548
AGB31698.1
Transposase.
  
     0.542
AGB30840.1
PFAM: HTH DNA binding domain.
  
     0.539
AGB30343.1
Putative Na+-dependent transporter; PFAM: Sodium Bile acid symporter family; TIGRFAM: bile acid transporter.
       0.537
AGB31748.1
PAS domain S-box; PFAM: HTH DNA binding domain; Response regulator receiver domain; PAS fold; TIGRFAM: PAS domain S-box.
  
     0.511
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.